IL_3J6B_072

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAG*UGUAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_072 not in the Motif Atlas

Geometric match to IL_6DVK_004

Geometric discrepancy: 0.3943

The information below is about IL_6DVK_004

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3J6B|1|A|C|2731
3J6B|1|A|G|2732
3J6B|1|A|A|2733
3J6B|1|A|A|2734
3J6B|1|A|A|2735
3J6B|1|A|G|2736
*
3J6B|1|A|U|2746
3J6B|1|A|G|2747
3J6B|1|A|U|2748
3J6B|1|A|A|2749
3J6B|1|A|A|2750
3J6B|1|A|G|2751

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 0

54S ribosomal protein RTC6, mitochondrial

Chain K

54S ribosomal protein L16, mitochondrial