IL_3J6B_074

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

3J6B|1|A|G|2843, 3J6B|1|A|A|2844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_074 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.0933

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

3J6B|1|A|C|2776
3J6B|1|A|U|2777
3J6B|1|A|C|2778
*
3J6B|1|A|G|2841
3J6B|1|A|U|2842
3J6B|1|A|G|2843
3J6B|1|A|A|2844
3J6B|1|A|G|2845

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain C

54S ribosomal protein L9, mitochondrial

Chain I

54S ribosomal protein L38, mitochondrial

Chain W

54S ribosomal protein L32, mitochondrial