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Motif IL_07785.1 Version IL_07785.1 of this group appears in releases 3.96 to 3.99

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 5 61-62-53-4
1 IL_8CRE_1508CRE0.72031Isolated non-canonical cWW pair4 5.8S rRNAU64A65A66*U93C94A96cWWncWWcWW
2 IL_8P9A_3718P9A0.72961Isolated non-canonical cWW with bulgesAT 5.8S rRNAU64A65A66*U93C94A96cWWncWScWW
3 IL_7ELQ_0027ELQ0.73042Isolated non-canonical cWW with bulgesANMT1 RNAC15A16G17*C32C33G36cWWncWScWW
4 IL_7A0S_1127A0S0.70071Isolated non-canonical cWW with bulgesY 5S rRNAC19A20C21*G66C67G69ncWWncWWncWW
5 IL_7DLZ_0037DLZ0.54801Isolated non-canonical cWW with bulgesXRNA (45-MER)G12A13G14*C33C34C36ncWWcWW
6 IL_4V9F_0974V9F0.49421Isolated non-canonical cWW with bulges0 LSU rRNAG2855A2856C2857*G2900C2901C2903cWWncWWcWW
7 IL_5ML7_0105ML70.57101Isolated non-canonical cWW with bulgesB23S ribosomal RNAU2181A2182C2183*G2196C2197A2199cWWcWWcWW
8 IL_4PKD_0014PKD0.55921Isolated non-canonical cWW with bulgesVU1 snRNA stem-loops 1 and 2 (55-MER)G106U107U108*A86U87C89cWWcWwcWW
9 IL_5J7L_3405J7L0.56982Isolated non-canonical cWW with bulgesDA LSU rRNAC2510U2511C2512*G2574C2575G2578cWWncWWcWW
10 IL_9DFE_0979DFE0.54562Isolated non-canonical cWW with bulges1A LSU rRNAC2510U2511C2512*G2574C2575G2578cWWncWWcWW
11 IL_4WF9_0954WF90.54112Isolated non-canonical cWW with bulgesX LSU rRNAC2537U2538C2539*G2601C2602G2605cWWncWWcWW
12 IL_7A0S_0897A0S0.56772Isolated non-canonical cWW with bulgesX LSU rRNAC2489U2490C2491*G2553C2554G2557cWWcWW
13 IL_4V9F_0874V9F0.62832Isolated non-canonical cWW with bulges0 LSU rRNAU2545U2546C2547*G2609U2610G2613cWWcWwcWW
14 IL_8P9A_3358P9A0.56322Isolated non-canonical cWW with bulgesAR LSU rRNAC2879U2880C2881*G2943U2944G2947cWWcWwcWW
15 IL_8CRE_1168CRE0.54662Isolated non-canonical cWW with bulges1 LSU rRNAC2851U2852C2853*G2915U2916G2919cWWcWwcWW
16 IL_4V83_2354V830.29860Isolated non-canonical cWW pairCVdomain 3 of PSIC IGR IRES RNAG6173U6174G6175*C6153U6154C6155cWWncwWcWW
17 IL_8P9A_4598P9A0.24280Isolated non-canonical cWW pairsR SSU rRNAU1665U1666A1667*U1734U1735G1736cWWcWW
18 IL_8CRE_4738CRE0.16540Isolated non-canonical cWW pairCM SSU rRNAU1652U1653A1654*U1721U1722G1723ncWWcWW
19 IL_7A0S_1077A0S0.19920Isolated non-canonical cWW pairY 5S rRNAU82C83G84*C97C98G99cWWncBWcWW
20 IL_8CRE_4648CRE0.20120Isolated non-canonical cWW pairCM SSU rRNAU1483U1484G1485*C1496U1497G1498cWWcWW
21 IL_4KYY_0024KYY0.21010Isolated non-canonical cWW pairB+ARNA 17-merU8U9G10*U8U9G10cWWcWW
22 IL_4WF9_0184WF90.23030Isolated non-canonical cWW pairX LSU rRNAU705U706G707*U638U639G640cWWcWW
23 IL_8P9A_2458P9A0.00000Isolated non-canonical cWW pairAR LSU rRNAU429U430U431*A628U629A630cWWcWW
24 IL_4Y1M_0054Y1M0.13750Isolated non-canonical cWW pairBE. coli yybP-ykoY riboswitchA103U104A105*U4U5U6cWWncWwcWW
25 IL_7A0S_0117A0S0.17430Isolated non-canonical cWW pairX LSU rRNAA584U585G586*C573C574U575cWWcWWcWW
26 IL_4WF9_0174WF90.23450Isolated non-canonical cWW pairX LSU rRNAA618U619G620*C607C608U609cWWcWWcWW
27 IL_5J7L_2575J7L0.23170Isolated non-canonical cWW pairDA LSU rRNAA575U576G577*C564C565U566cWWcWWcWW
28 IL_9DFE_0139DFE0.22740Isolated non-canonical cWW pair1A LSU rRNAA575U576G577*C564C565U566cWWcWWcWW
29 IL_7QQP_0077QQP0.21370Isolated non-canonical cWW pairC+AAAVS1 off-target3 target strandDA12DC13DT14*A7C8U9ncWWncwWcWW
30 IL_8P9A_4158P9A0.36631Isolated non-canonical cWW pairsR SSU rRNAG819U821U822*A850U851C852cWWcWwcWW
31 IL_8CRE_0648CRE0.57011Isolated non-canonical cWW pair1 LSU rRNAU1394U1396G1397*C1406U1407G1408cWWcWwcWW
32 IL_8P9A_4718P9A0.53402Isolated non-canonical cWW pairsR SSU rRNAU1369U1372C1373*G1352U1353G1354ncWWcWwcWW
33 IL_5B2P_0025B2P0.55611Isolated non-canonical cWW pairBGuide RNAG28U30G31*C44U45C46cWWcWwcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUC*GCGAG4
AUG*CCU4
UAA*UCGA2
CUC*GUGAG2
UUA*UUG2
UUG*UUG2
CAG*CCCGG1
CAC*GCAG1
GAG*CCAC1
GAC*GCAC1
UAC*GCCA1
GUU*AUAC1
UUC*GUGAG1
GUG*CUC1
UCG*CCG1
UUG*CUG1
UUU*AUA1
AUA*UUU1
ACT*ACU1
GUUU*AUC1
UUUG*CUG1
UUAUC*GUG1
GUUG*CUC1
Non-Watson-Crick part of the motif
SequenceCounts
U*U8
U*CGA4
U*C4
A*CA3
U*UGA3
UU*U3
A*CG2
C*C2
A*CCG1
A*CC1
U*UA1
UAU*U1

Release history

Release3.963.973.983.99
Date2025-04-232025-05-212025-06-182025-07-16
StatusNew id, > 2 parentsExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated non-canonical cWW pair (19)
  • Isolated non-canonical cWW with bulges (14)
    • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.06 | Avg 0.49 | Max 0.89
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