3D structure

PDB id
3J6B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast mitochondrial large ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAAAU*AUAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J6B_078 not in the Motif Atlas
Geometric match to IL_7RQB_075
Geometric discrepancy: 0.1781
The information below is about IL_7RQB_075
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_56467.8
Basepair signature
cWW-tSH-tSH-tHS-cWW
Number of instances in this motif group
29

Unit IDs

3J6B|1|A|C|2902
3J6B|1|A|A|2903
3J6B|1|A|A|2904
3J6B|1|A|A|2905
3J6B|1|A|U|2906
*
3J6B|1|A|A|3112
3J6B|1|A|U|3113
3J6B|1|A|A|3114
3J6B|1|A|A|3115
3J6B|1|A|G|3116

Current chains

Chain A
21S ribosomal RNA

Nearby chains

Chain C
54S ribosomal protein L9, mitochondrial
Chain H
54S ribosomal protein L23, mitochondrial

Coloring options:


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