IL_3J6B_079

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAGUAC*GGACCA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_079 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.1045

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

3J6B|1|A|U|2919
3J6B|1|A|U|2920
3J6B|1|A|A|2921
3J6B|1|A|G|2922
3J6B|1|A|U|2923
3J6B|1|A|A|2924
3J6B|1|A|C|2925
*
3J6B|1|A|G|2930
3J6B|1|A|G|2931
3J6B|1|A|A|2932
3J6B|1|A|C|2933
3J6B|1|A|C|2934
3J6B|1|A|A|2935

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain F

54S ribosomal protein L6, mitochondrial