IL_3J6B_080

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCCAU*AAG

Length

8 nucleotides

Bulged bases

3J6B|1|A|A|3062

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_080 not in the Motif Atlas

Homologous match to IL_7RQB_104

Geometric discrepancy: 0.1725

The information below is about IL_7RQB_104

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

3J6B|1|A|C|2947
3J6B|1|A|C|2948
3J6B|1|A|C|2949
3J6B|1|A|A|2950
3J6B|1|A|U|2951
*
3J6B|1|A|A|3061
3J6B|1|A|A|3062
3J6B|1|A|G|3063

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain C

54S ribosomal protein L9, mitochondrial

Chain I

54S ribosomal protein L38, mitochondrial

Chain M

54S ribosomal protein IMG1, mitochondrial