IL_3J6B_084

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUAUU*AUAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_084 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2537

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

3J6B|1|A|A|2978
3J6B|1|A|U|2979
3J6B|1|A|A|2980
3J6B|1|A|U|2981
3J6B|1|A|U|3002
*
3J6B|1|A|A|3007
3J6B|1|A|U|3008
3J6B|1|A|A|3009
3J6B|1|A|U|3010
3J6B|1|A|U|3011

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain L

54S ribosomal protein L8, mitochondrial