IL_3J6X_018

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GCC*GUGC

Length

7 nucleotides

Bulged bases

3J6X|1|1S|U|280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6X_018 not in the Motif Atlas

Geometric match to IL_5TBW_110

Geometric discrepancy: 0.3141

The information below is about IL_5TBW_110

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

3J6X|1|1S|G|274
3J6X|1|1S|C|275
3J6X|1|1S|C|276
*
3J6X|1|1S|G|279
3J6X|1|1S|U|280
3J6X|1|1S|G|281
3J6X|1|1S|C|282

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain S6

40S ribosomal protein S6