IL_3J6X_031

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

3J6X|1|1S|U|558

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6X_031 not in the Motif Atlas

Homologous match to IL_4V88_414

Geometric discrepancy: 0.5153

The information below is about IL_4V88_414

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

3J6X|1|1S|G|557
3J6X|1|1S|U|558
3J6X|1|1S|C|559
*
3J6X|1|1S|G|586
3J6X|1|1S|C|587

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 30

40S ribosomal protein S30

Chain IR

TSV IRES mRNA

Chain S3

40S ribosomal protein S3