IL_3J6X_067

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6X_067 not in the Motif Atlas

Geometric match to IL_5J7L_064

Geometric discrepancy: 0.2641

The information below is about IL_5J7L_064

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

3J6X|1|1S|C|1306
3J6X|1|1S|U|1307
3J6X|1|1S|G|1308
*
3J6X|1|1S|C|1317
3J6X|1|1S|G|1318

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 17

40S ribosomal protein S17