IL_3J6X_069
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AAUAG*CUUCU
- Length
- 10 nucleotides
- Bulged bases
- 3J6X|1|1S|A|1346, 3J6X|1|1S|U|1347
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_069 not in the Motif Atlas
- Homologous match to IL_8CRE_459
- Geometric discrepancy: 0.3724
- The information below is about IL_8CRE_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J6X|1|1S|A|1345
3J6X|1|1S|A|1346
3J6X|1|1S|U|1347
3J6X|1|1S|A|1348
3J6X|1|1S|G|1349
*
3J6X|1|1S|C|1376
3J6X|1|1S|U|1377
3J6X|1|1S|U|1378
3J6X|1|1S|C|1379
3J6X|1|1S|U|1380
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 16
- 40S ribosomal protein S16
- Chain 20
- 40S ribosomal protein S20
- Chain RA
- Guanine nucleotide-binding protein subunit beta-like protein
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