IL_3J6X_078

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6X_078 not in the Motif Atlas

Geometric match to IL_4E48_006

Geometric discrepancy: 0.1815

The information below is about IL_4E48_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

3J6X|1|1S|G|1642
3J6X|1|1S|U|1643
3J6X|1|1S|C|1644
*
3J6X|1|1S|G|1757
3J6X|1|1S|U|1758
3J6X|1|1S|C|1759

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 2S

Large subunit ribosomal RNA; LSU rRNA

Chain 81

60S ribosomal protein L41

Chain IR

TSV IRES mRNA