IL_3J6X_081

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CGAUUG*UAGAG

Length

11 nucleotides

Bulged bases

3J6X|1|1S|U|1657

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6X|1|1S|C|1653
3J6X|1|1S|G|1654
3J6X|1|1S|A|1655
3J6X|1|1S|U|1656
3J6X|1|1S|U|1657
3J6X|1|1S|G|1658
*
3J6X|1|1S|U|1743
3J6X|1|1S|A|1744
3J6X|1|1S|G|1745
3J6X|1|1S|A|1746
3J6X|1|1S|G|1747

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 23

40S ribosomal protein S23

Chain 2S

Large subunit ribosomal RNA; LSU rRNA

Chain 63

60S ribosomal protein L23

Chain 81

60S ribosomal protein L41