IL_3J6X_093

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

AUC*GAGUUGU

Length

10 nucleotides

Bulged bases

3J6X|1|2S|U|147

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6X|1|2S|A|123
3J6X|1|2S|U|124
3J6X|1|2S|C|125
*
3J6X|1|2S|G|143
3J6X|1|2S|A|144
3J6X|1|2S|G|145
3J6X|1|2S|U|146
3J6X|1|2S|U|147
3J6X|1|2S|G|148
3J6X|1|2S|U|149

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 55

60S ribosomal protein L15

Chain 8S

5.8S ribosomal RNA; 5.8S rRNA

Chain L8

60S ribosomal protein L8