IL_3J6X_100
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 3J6X|1|2S|A|398, 3J6X|1|2S|A|402
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_100 not in the Motif Atlas
- Homologous match to IL_5TBW_014
- Geometric discrepancy: 0.1798
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
3J6X|1|2S|G|376
3J6X|1|2S|A|377
3J6X|1|2S|A|378
3J6X|1|2S|C|379
*
3J6X|1|2S|G|390
3J6X|1|2S|A|391
3J6X|1|2S|G|392
3J6X|1|2S|U|393
3J6X|1|2S|G|394
3J6X|1|2S|A|395
3J6X|1|2S|A|396
3J6X|1|2S|A|397
3J6X|1|2S|A|398
3J6X|1|2S|A|399
3J6X|1|2S|G|400
3J6X|1|2S|U|401
3J6X|1|2S|A|402
3J6X|1|2S|C|403
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 57
- 60S ribosomal protein L17
- Chain 66
- 60S ribosomal protein L26
- Chain 79
- 60S ribosomal protein L39
- Chain 8S
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: