IL_3J6X_101
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_101 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.179
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J6X|1|2S|G|404
3J6X|1|2S|U|405
3J6X|1|2S|G|406
3J6X|1|2S|A|407
3J6X|1|2S|A|408
3J6X|1|2S|A|409
3J6X|1|2S|U|410
*
3J6X|1|8S|A|13
3J6X|1|8S|C|14
3J6X|1|8S|G|15
3J6X|1|8S|G|16
3J6X|1|8S|A|17
3J6X|1|8S|U|18
3J6X|1|8S|C|19
Current chains
- Chain 2S
- 25S ribosomal RNA
- Chain 8S
- 5.8S ribosomal RNA
Nearby chains
- Chain 57
- 60S ribosomal protein L17
- Chain 72
- 60S ribosomal protein L32
- Chain L4
- 60S ribosomal protein L4
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