IL_3J6X_108
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GUUUG*CAUAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_108 not in the Motif Atlas
- Homologous match to IL_5TBW_022
- Geometric discrepancy: 0.2307
- The information below is about IL_5TBW_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74284.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J6X|1|2S|G|680
3J6X|1|2S|U|681
3J6X|1|2S|U|682
3J6X|1|2S|U|683
3J6X|1|2S|G|684
*
3J6X|1|2S|C|696
3J6X|1|2S|A|697
3J6X|1|2S|U|698
3J6X|1|2S|A|699
3J6X|1|2S|C|700
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 53
- 60S ribosomal protein L13
- Chain 55
- 60S ribosomal protein L15
- Chain 68
- 60S ribosomal protein L28
- Chain L4
- 60S ribosomal protein L4
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