IL_3J6X_111

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

AUC*GAUU

Length

7 nucleotides

Bulged bases

3J6X|1|2S|U|776

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6X_111 not in the Motif Atlas

Geometric match to IL_4V83_235

Geometric discrepancy: 0.229

The information below is about IL_4V83_235

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

3J6X|1|2S|A|755
3J6X|1|2S|U|756
3J6X|1|2S|C|757
*
3J6X|1|2S|G|774
3J6X|1|2S|A|775
3J6X|1|2S|U|776
3J6X|1|2S|U|777

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 58

60S ribosomal protein L18

Chain 69

60S ribosomal protein L29

Chain 82

60S ribosomal protein L42