IL_3J6X_122

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

3J6X|1|2S|G|984

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6X_122 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.2198

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

3J6X|1|2S|A|983
3J6X|1|2S|G|984
3J6X|1|2S|U|985
*
3J6X|1|2S|A|1099
3J6X|1|2S|U|1100

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 58

60S ribosomal protein L18

Chain 61

60S ribosomal protein L21

Chain 69

60S ribosomal protein L29

Chain L7

60S ribosomal protein L7