IL_3J6X_138

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

AUCUAGACAG*CCGAAU

Length

16 nucleotides

Bulged bases

3J6X|1|2S|A|1221

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6X|1|2S|A|1217
3J6X|1|2S|U|1218
3J6X|1|2S|C|1219
3J6X|1|2S|U|1220
3J6X|1|2S|A|1221
3J6X|1|2S|G|1222
3J6X|1|2S|A|1223
3J6X|1|2S|C|1224
3J6X|1|2S|A|1225
3J6X|1|2S|G|1226
*
3J6X|1|2S|C|1283
3J6X|1|2S|C|1284
3J6X|1|2S|G|1285
3J6X|1|2S|A|1286
3J6X|1|2S|A|1287
3J6X|1|2S|U|1288

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 60

60S ribosomal protein L20

Chain 80

60S ribosomal protein L40

Chain L9

60S ribosomal protein L9