IL_3J6X_164

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CUUGGU*ACG

Length

9 nucleotides

Bulged bases

3J6X|1|2S|U|1967, 3J6X|1|2S|G|1968

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6X_164 not in the Motif Atlas

Geometric match to IL_4V9F_003

Geometric discrepancy: 0.2584

The information below is about IL_4V9F_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

3J6X|1|2S|C|1965
3J6X|1|2S|U|1966
3J6X|1|2S|U|1967
3J6X|1|2S|G|1968
3J6X|1|2S|G|1969
3J6X|1|2S|U|1970
*
3J6X|1|2S|A|2049
3J6X|1|2S|C|2050
3J6X|1|2S|G|2051

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 78

60S ribosomal protein L38