IL_3J6X_166

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CGAUGGU*AUGUUGACG

Length

16 nucleotides

Bulged bases

3J6X|1|2S|U|2159, 3J6X|1|2S|U|2175, 3J6X|1|2S|C|2179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6X_166 not in the Motif Atlas

Geometric match to IL_4WF9_069

Geometric discrepancy: 0.3936

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

3J6X|1|2S|C|2156
3J6X|1|2S|G|2157
3J6X|1|2S|A|2158
3J6X|1|2S|U|2159
3J6X|1|2S|G|2160
3J6X|1|2S|G|2161
3J6X|1|2S|U|2162
*
3J6X|1|2S|A|2172
3J6X|1|2S|U|2173
3J6X|1|2S|G|2174
3J6X|1|2S|U|2175
3J6X|1|2S|U|2176
3J6X|1|2S|G|2177
3J6X|1|2S|A|2178
3J6X|1|2S|C|2179
3J6X|1|2S|G|2180

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 1S

Small subunit ribosomal RNA; SSU rRNA

Chain 83

60S ribosomal protein L43

Chain L2

60S ribosomal protein L2