IL_3J6X_186

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GGCUUG*UGAUUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6X|1|2S|G|2823
3J6X|1|2S|G|2824
3J6X|1|2S|C|2825
3J6X|1|2S|U|2826
3J6X|1|2S|U|2827
3J6X|1|2S|G|2828
*
3J6X|1|2S|U|2862
3J6X|1|2S|G|2863
3J6X|1|2S|A|2864
3J6X|1|2S|U|2865
3J6X|1|2S|U|2866
3J6X|1|2S|C|2867

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 50

60S ribosomal protein L10

Chain 69

60S ribosomal protein L29

Chain L3

60S ribosomal protein L3