IL_3J6X_188

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6X_188 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1954

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

3J6X|1|2S|U|2835
3J6X|1|2S|C|2836
3J6X|1|2S|A|2837
3J6X|1|2S|A|2838
3J6X|1|2S|G|2839
*
3J6X|1|2S|C|2849
3J6X|1|2S|G|2850
3J6X|1|2S|A|2851
3J6X|1|2S|C|2852
3J6X|1|2S|A|2853

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 50

60S ribosomal protein L10

Chain 80

60S ribosomal protein L40