IL_3J6X_216

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

3J6X|1|2S|U|3354, 3J6X|1|2S|U|3355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6X_216 not in the Motif Atlas

Geometric match to IL_4V9F_088

Geometric discrepancy: 0.3048

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

3J6X|1|2S|C|3349
3J6X|1|2S|C|3350
*
3J6X|1|2S|G|3353
3J6X|1|2S|U|3354
3J6X|1|2S|U|3355
3J6X|1|2S|G|3356

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 62

60S ribosomal protein L22

Chain S8

40S ribosomal protein S8