IL_3J6X_225

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UAAU*AUCGA

Length

9 nucleotides

Bulged bases

3J6X|1|8S|G|95

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6X|1|8S|U|64
3J6X|1|8S|A|65
3J6X|1|8S|A|66
3J6X|1|8S|U|67
*
3J6X|1|8S|A|92
3J6X|1|8S|U|93
3J6X|1|8S|C|94
3J6X|1|8S|G|95
3J6X|1|8S|A|96

Current chains

Chain 8S

5.8S ribosomal RNA

Nearby chains

Chain 2S

Large subunit ribosomal RNA; LSU rRNA

Chain 66

60S ribosomal protein L26

Chain 75

60S ribosomal protein L35

Chain 77

60S ribosomal protein L37