IL_3J6X_251
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 3J6X|1|2S|U|2159, 3J6X|1|2S|U|2175, 3J6X|1|2S|C|2179
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_251 not in the Motif Atlas
- Homologous match to IL_8P9A_311
- Geometric discrepancy: 0.2034
- The information below is about IL_8P9A_311
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14684.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
3J6X|1|2S|C|2156
3J6X|1|2S|G|2157
3J6X|1|2S|A|2158
3J6X|1|2S|U|2159
3J6X|1|2S|G|2160
3J6X|1|2S|G|2161
*
3J6X|1|2S|U|2173
3J6X|1|2S|G|2174
3J6X|1|2S|U|2175
3J6X|1|2S|U|2176
3J6X|1|2S|G|2177
3J6X|1|2S|A|2178
3J6X|1|2S|C|2179
3J6X|1|2S|G|2180
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 1S
- Small subunit ribosomal RNA; SSU rRNA
- Chain 83
- 60S ribosomal protein L43
- Chain L2
- 60S ribosomal protein L2
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