IL_3J6Y_015

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

AUU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_015 not in the Motif Atlas

Geometric match to IL_5VCI_001

Geometric discrepancy: 0.1565

The information below is about IL_5VCI_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

3J6Y|1|1S|A|206
3J6Y|1|1S|U|207
3J6Y|1|1S|U|208
*
3J6Y|1|1S|A|257
3J6Y|1|1S|C|258
3J6Y|1|1S|U|259

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4

Chain S8

40S ribosomal protein S8