IL_3J6Y_018

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

3J6Y|1|1S|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_018 not in the Motif Atlas

Geometric match to IL_4V88_401

Geometric discrepancy: 0.2998

The information below is about IL_4V88_401

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

3J6Y|1|1S|C|275
3J6Y|1|1S|C|276
*
3J6Y|1|1S|G|279
3J6Y|1|1S|U|280
3J6Y|1|1S|G|281

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain S6

40S ribosomal protein S6