IL_3J6Y_027

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GAUA*UAAUU

Length

9 nucleotides

Bulged bases

3J6Y|1|1S|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6Y|1|1S|G|480
3J6Y|1|1S|A|481
3J6Y|1|1S|U|482
3J6Y|1|1S|A|483
*
3J6Y|1|1S|U|504
3J6Y|1|1S|A|505
3J6Y|1|1S|A|506
3J6Y|1|1S|U|507
3J6Y|1|1S|U|508

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 30

40S ribosomal protein S30

Chain S9

40S ribosomal protein S9