IL_3J6Y_031

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

3J6Y|1|1S|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_031 not in the Motif Atlas

Geometric match to IL_5J7L_046

Geometric discrepancy: 0.3416

The information below is about IL_5J7L_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

3J6Y|1|1S|G|557
3J6Y|1|1S|U|558
3J6Y|1|1S|C|559
*
3J6Y|1|1S|G|586
3J6Y|1|1S|C|587

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 30

40S ribosomal protein S30

Chain IR

TSV IRES mRNA

Chain S3

40S ribosomal protein S3