IL_3J6Y_037

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GGCCGGUC*GGAUUUCC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6Y|1|1S|G|651
3J6Y|1|1S|G|652
3J6Y|1|1S|C|653
3J6Y|1|1S|C|654
3J6Y|1|1S|G|655
3J6Y|1|1S|G|656
3J6Y|1|1S|U|657
3J6Y|1|1S|C|658
*
3J6Y|1|1S|G|676
3J6Y|1|1S|G|677
3J6Y|1|1S|A|678
3J6Y|1|1S|U|679
3J6Y|1|1S|U|680
3J6Y|1|1S|U|681
3J6Y|1|1S|C|682
3J6Y|1|1S|C|683

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains