IL_3J6Y_042

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_042 not in the Motif Atlas

Geometric match to IL_6N5P_003

Geometric discrepancy: 0.1406

The information below is about IL_6N5P_003

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

3J6Y|1|1S|A|865
3J6Y|1|1S|G|866
*
3J6Y|1|1S|C|962
3J6Y|1|1S|A|963
3J6Y|1|1S|U|964
3J6Y|1|1S|U|965

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 13

40S ribosomal protein S13

Chain 22

40S ribosomal protein S22

Chain 27

40S ribosomal protein S27