IL_3J6Y_047
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 3J6Y|1|1S|U|912, 3J6Y|1|1S|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_047 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.35
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
3J6Y|1|1S|U|893
3J6Y|1|1S|U|894
3J6Y|1|1S|G|895
3J6Y|1|1S|U|896
3J6Y|1|1S|C|897
3J6Y|1|1S|A|898
3J6Y|1|1S|G|899
*
3J6Y|1|1S|C|910
3J6Y|1|1S|U|911
3J6Y|1|1S|U|912
3J6Y|1|1S|G|913
3J6Y|1|1S|G|914
3J6Y|1|1S|A|915
3J6Y|1|1S|U|916
3J6Y|1|1S|U|917
3J6Y|1|1S|U|918
3J6Y|1|1S|A|919
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 14
- 40S ribosomal protein S14
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain S1
- 40S ribosomal protein S1
Coloring options: