IL_3J6Y_048
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GGGAUC*GUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_048 not in the Motif Atlas
- Geometric match to IL_4V88_435
- Geometric discrepancy: 0.2085
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
3J6Y|1|1S|G|985
3J6Y|1|1S|G|986
3J6Y|1|1S|G|987
3J6Y|1|1S|A|988
3J6Y|1|1S|U|989
3J6Y|1|1S|C|990
*
3J6Y|1|1S|G|1014
3J6Y|1|1S|U|1015
3J6Y|1|1S|C|1016
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 14
- 40S ribosomal protein S14
- Chain 26
- 40S ribosomal protein S26
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain 83
- 60S ribosomal protein L43
- Chain L2
- 60S ribosomal protein L2
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