IL_3J6Y_052

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

3J6Y|1|1S|U|1052

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_052 not in the Motif Atlas

Homologous match to IL_4V88_439

Geometric discrepancy: 0.363

The information below is about IL_4V88_439

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

3J6Y|1|1S|G|1051
3J6Y|1|1S|U|1052
3J6Y|1|1S|G|1053
*
3J6Y|1|1S|C|1066
3J6Y|1|1S|C|1067

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 17

40S ribosomal protein S17

Chain 27

40S ribosomal protein S27

Chain S1

40S ribosomal protein S1