IL_3J6Y_060

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

AUAAGGA*UUU

Length

10 nucleotides

Bulged bases

3J6Y|1|1S|G|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6Y|1|1S|A|1224
3J6Y|1|1S|U|1225
3J6Y|1|1S|A|1226
3J6Y|1|1S|A|1227
3J6Y|1|1S|G|1228
3J6Y|1|1S|G|1229
3J6Y|1|1S|A|1230
*
3J6Y|1|1S|U|1257
3J6Y|1|1S|U|1258
3J6Y|1|1S|U|1259

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 10

40S ribosomal protein S10

Chain 12

40S ribosomal protein S12

Chain 31

40S ribosomal protein S31