IL_3J6Y_069
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CUAC*GAG
- Length
- 7 nucleotides
- Bulged bases
- 3J6Y|1|1S|U|1340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_069 not in the Motif Atlas
- Homologous match to IL_4V88_455
- Geometric discrepancy: 0.238
- The information below is about IL_4V88_455
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
3J6Y|1|1S|C|1339
3J6Y|1|1S|U|1340
3J6Y|1|1S|A|1341
3J6Y|1|1S|C|1342
*
3J6Y|1|1S|G|1383
3J6Y|1|1S|A|1384
3J6Y|1|1S|G|1385
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 16
- 40S ribosomal protein S16
- Chain 17
- 40S ribosomal protein S17
- Chain 20
- 40S ribosomal protein S20
- Chain RA
- Guanine nucleotide-binding protein subunit beta-like protein
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