IL_3J6Y_073
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GUCUAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 3J6Y|1|1S|A|1516
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_073 not in the Motif Atlas
- Homologous match to IL_4V88_460
- Geometric discrepancy: 0.2878
- The information below is about IL_4V88_460
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_77092.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
3J6Y|1|1S|G|1488
3J6Y|1|1S|U|1489
3J6Y|1|1S|C|1490
3J6Y|1|1S|U|1491
3J6Y|1|1S|A|1492
3J6Y|1|1S|A|1493
3J6Y|1|1S|C|1494
*
3J6Y|1|1S|G|1513
3J6Y|1|1S|U|1514
3J6Y|1|1S|A|1515
3J6Y|1|1S|A|1516
3J6Y|1|1S|U|1517
3J6Y|1|1S|C|1518
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 19
- 40S ribosomal protein S19
- Chain 20
- 40S ribosomal protein S20
- Chain 29
- 40S ribosomal protein S29
- Chain S3
- 40S ribosomal protein S3
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