IL_3J6Y_079
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_079 not in the Motif Atlas
- Homologous match to IL_8CRE_469
- Geometric discrepancy: 0.3057
- The information below is about IL_8CRE_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_11399.2
- Basepair signature
- cWW-cHW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
3J6Y|1|1S|C|1644
3J6Y|1|1S|G|1645
3J6Y|1|1S|C|1646
3J6Y|1|1S|U|1647
*
3J6Y|1|1S|A|1753
3J6Y|1|1S|A|1754
3J6Y|1|1S|A|1755
3J6Y|1|1S|A|1756
3J6Y|1|1S|G|1757
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 23
- 40S ribosomal protein S23
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain 30
- 40S ribosomal protein S30
- Chain 81
- 60S ribosomal protein L41
- Chain IR
- TSV IRES mRNA
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