IL_3J6Y_080

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_080 not in the Motif Atlas

Homologous match to IL_4V88_467

Geometric discrepancy: 0.164

The information below is about IL_4V88_467

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

3J6Y|1|1S|U|1650
3J6Y|1|1S|A|1651
3J6Y|1|1S|C|1652
*
3J6Y|1|1S|G|1748
3J6Y|1|1S|A|1749
3J6Y|1|1S|A|1750

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 23

40S ribosomal protein S23

Chain 2S

Large subunit ribosomal RNA; LSU rRNA

Chain 81

60S ribosomal protein L41