3D structure

PDB id
3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.1 Å

Loop

Sequence
UUGA*UUA
Length
7 nucleotides
Bulged bases
3J6Y|1|1S|U|1657
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J6Y_082 not in the Motif Atlas
Geometric match to IL_4TS2_003
Geometric discrepancy: 0.2975
The information below is about IL_4TS2_003
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_52767.5
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
28

Unit IDs

3J6Y|1|1S|U|1656
3J6Y|1|1S|U|1657
3J6Y|1|1S|G|1658
3J6Y|1|1S|A|1659
*
3J6Y|1|1S|U|1742
3J6Y|1|1S|U|1743
3J6Y|1|1S|A|1744

Current chains

Chain 1S
18S ribosomal RNA

Nearby chains

Chain 23
40S ribosomal protein S23
Chain 2S
Large subunit ribosomal RNA; LSU rRNA
Chain 63
60S ribosomal protein L23
Chain 81
60S ribosomal protein L41

Coloring options:


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