IL_3J6Y_082
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UUGA*UUA
- Length
- 7 nucleotides
- Bulged bases
- 3J6Y|1|1S|U|1657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_082 not in the Motif Atlas
- Geometric match to IL_4TS2_003
- Geometric discrepancy: 0.2975
- The information below is about IL_4TS2_003
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_52767.5
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 28
Unit IDs
3J6Y|1|1S|U|1656
3J6Y|1|1S|U|1657
3J6Y|1|1S|G|1658
3J6Y|1|1S|A|1659
*
3J6Y|1|1S|U|1742
3J6Y|1|1S|U|1743
3J6Y|1|1S|A|1744
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 23
- 40S ribosomal protein S23
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain 63
- 60S ribosomal protein L23
- Chain 81
- 60S ribosomal protein L41
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