IL_3J6Y_084
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UGAG*CAAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_084 not in the Motif Atlas
- Geometric match to IL_1SAQ_002
- Geometric discrepancy: 0.1508
- The information below is about IL_1SAQ_002
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.13
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
3J6Y|1|1S|U|1669
3J6Y|1|1S|G|1670
3J6Y|1|1S|A|1671
3J6Y|1|1S|G|1672
*
3J6Y|1|1S|C|1729
3J6Y|1|1S|A|1730
3J6Y|1|1S|A|1731
3J6Y|1|1S|A|1732
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain 64
- 60S ribosomal protein L24
- Chain S6
- 40S ribosomal protein S6
- Chain S8
- 40S ribosomal protein S8
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