IL_3J6Y_090

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

3J6Y|1|2S|U|14

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_090 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.3025

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

3J6Y|1|2S|A|13
3J6Y|1|2S|U|14
3J6Y|1|2S|C|15
*
3J6Y|1|8S|G|144
3J6Y|1|8S|U|145

Current chains

Chain 2S

25S ribosomal RNA

Chain 8S

5.8S ribosomal RNA

Nearby chains

Chain 55

60S ribosomal protein L15

Chain 65

60S ribosomal protein L25

Chain L8

60S ribosomal protein L8