IL_3J6Y_116

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

3J6Y|1|2S|G|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_116 not in the Motif Atlas

Geometric match to IL_7A0S_017

Geometric discrepancy: 0.1879

The information below is about IL_7A0S_017

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

3J6Y|1|2S|G|833
3J6Y|1|2S|U|834
*
3J6Y|1|2S|G|859
3J6Y|1|2S|G|860
3J6Y|1|2S|C|861

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 59

60S ribosomal protein L19

Chain 83

60S ribosomal protein L43

Chain L2

60S ribosomal protein L2