IL_3J6Y_124
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AGUU*AAU
- Length
- 7 nucleotides
- Bulged bases
- 3J6Y|1|2S|G|984
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_124 not in the Motif Atlas
- Geometric match to IL_7A0S_092
- Geometric discrepancy: 0.2876
- The information below is about IL_7A0S_092
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_10892.2
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 58
Unit IDs
3J6Y|1|2S|A|983
3J6Y|1|2S|G|984
3J6Y|1|2S|U|985
3J6Y|1|2S|U|986
*
3J6Y|1|2S|A|1098
3J6Y|1|2S|A|1099
3J6Y|1|2S|U|1100
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 58
- 60S ribosomal protein L18
- Chain 61
- 60S ribosomal protein L21
- Chain 69
- 60S ribosomal protein L29
- Chain L7
- 60S ribosomal protein L7
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