IL_3J6Y_130

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

3J6Y|1|2S|C|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_130 not in the Motif Atlas

Homologous match to IL_8C3A_508

Geometric discrepancy: 0.3351

The information below is about IL_8C3A_508

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07195.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

3J6Y|1|2S|U|1014
3J6Y|1|2S|U|1015
3J6Y|1|2S|C|1016
3J6Y|1|2S|C|1017
3J6Y|1|2S|G|1018
*
3J6Y|1|2S|U|1034
3J6Y|1|2S|G|1035
3J6Y|1|2S|A|1036

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 50

60S ribosomal protein L10

Chain 51

60S ribosomal protein L11

Chain L5

60S ribosomal protein L5