IL_3J6Y_141

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

3J6Y|1|2S|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_141 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.3363

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

3J6Y|1|2S|G|1234
3J6Y|1|2S|U|1235
3J6Y|1|2S|G|1236
3J6Y|1|2S|G|1237
3J6Y|1|2S|C|1238
*
3J6Y|1|2S|G|1250
3J6Y|1|2S|A|1251
3J6Y|1|2S|A|1252
3J6Y|1|2S|U|1253
3J6Y|1|2S|C|1254

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains