IL_3J6Y_144
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CAG*CG
- Length
- 5 nucleotides
- Bulged bases
- 3J6Y|1|2S|A|1386
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_144 not in the Motif Atlas
- Homologous match to IL_5TBW_058
- Geometric discrepancy: 0.1664
- The information below is about IL_5TBW_058
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
3J6Y|1|2S|C|1385
3J6Y|1|2S|A|1386
3J6Y|1|2S|G|1387
*
3J6Y|1|2S|C|1420
3J6Y|1|2S|G|1421
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 72
- 60S ribosomal protein L32
- Chain 8S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L4
- 60S ribosomal protein L4
- Chain L6
- 60S ribosomal protein L6
Coloring options: