IL_3J6Y_148

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GUCAAC*GGAC

Length

10 nucleotides

Bulged bases

3J6Y|1|2S|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_148 not in the Motif Atlas

Homologous match to IL_8C3A_066

Geometric discrepancy: 0.2311

The information below is about IL_8C3A_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93630.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

3J6Y|1|2S|G|1500
3J6Y|1|2S|U|1501
3J6Y|1|2S|C|1502
3J6Y|1|2S|A|1503
3J6Y|1|2S|A|1504
3J6Y|1|2S|C|1505
*
3J6Y|1|2S|G|1513
3J6Y|1|2S|G|1514
3J6Y|1|2S|A|1515
3J6Y|1|2S|C|1516

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 57

60S ribosomal protein L17

Chain 59

60S ribosomal protein L19

Chain 79

60S ribosomal protein L39